Detailed information of SNP:
|
SNP ID:
sf0230362368(Gbrowse)
Chromosome: chr02 Position: 30362368 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 63.88% | 36.12% |
| All Indica | 758 | 41.56% | 58.44% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 47.69% | 52.31% |
| Indica I | 364 | 18.41% | 81.59% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 182 | 48.90% | 51.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230362368 | A->G | INTERGENIC | None |