Detailed information of SNP:
|
SNP ID:
sf0230364545(Gbrowse)
Chromosome: chr02 Position: 30364545 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 63.80% | 36.20% |
| All Indica | 797 | 37.26% | 62.74% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 14.40% | 85.60% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230364545 | G->A | INTERGENIC | None |