Detailed information of SNP:
|
SNP ID:
sf0230397491(Gbrowse)
Chromosome: chr02 Position: 30397491 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 68.06% | 31.94% |
| All Indica | 793 | 44.39% | 55.61% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 21.24% | 78.76% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 209 | 53.59% | 46.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230397491 | G->T | LOC_Os02g49730(LOC_Os02g49730.1) | INTRON |