Detailed information of SNP:
|
SNP ID:
sf0230475561(Gbrowse)
Chromosome: chr02 Position: 30475561 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.05% | 41.95% |
| All Indica | 796 | 92.84% | 7.16% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 95.43% | 4.57% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230475561 | T->G | INTERGENIC | None |