Detailed information of SNP:
|
SNP ID:
sf0230499085(Gbrowse)
Chromosome: chr02 Position: 30499085 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.99% | 6.01% |
| All Indica | 795 | 95.35% | 4.65% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230499085 | G->T | INTERGENIC | None |