Detailed information of SNP:
|
SNP ID:
sf0230503555(Gbrowse)
Chromosome: chr02 Position: 30503555 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 53.49% | 46.51% |
| All Indica | 759 | 19.50% | 80.50% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 362 | 11.33% | 88.67% |
| Indica II | 200 | 19.00% | 81.00% |
| Indica Intermediate | 197 | 35.03% | 64.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230503555 | G->T | INTERGENIC | None |