Detailed information of SNP:
|
SNP ID:
sf0230569069(Gbrowse)
Chromosome: chr02 Position: 30569069 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 96.88% | 3.12% |
| All Indica | 791 | 94.69% | 5.31% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230569069 | T->C | LOC_Os02g50040(LOC_Os02g50040.1) | INTRON |