Detailed information of SNP:
|
SNP ID:
sf0230654836(Gbrowse)
Chromosome: chr02 Position: 30654836 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 93.07% | 6.93% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 38.71% | 61.29% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230654836 | C->T | INTERGENIC | None |