Detailed information of SNP:
|
SNP ID:
sf0230665256(Gbrowse)
Chromosome: chr02 Position: 30665256 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.78% | 44.22% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230665256 | A->T | LOC_Os02g50230(LOC_Os02g50230.1) | INTRON |