Detailed information of SNP:
|
SNP ID:
sf0230668723(Gbrowse)
Chromosome: chr02 Position: 30668723 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 55.16% | 44.84% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230668723 | A->G | INTERGENIC | None |