Detailed information of SNP:
|
SNP ID:
sf0230807806(Gbrowse)
Chromosome: chr02 Position: 30807806 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.13% | 48.87% |
| All Indica | 798 | 19.30% | 80.70% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 10.93% | 89.07% |
| Indica II | 212 | 32.08% | 67.92% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230807806 | C->T | LOC_Os02g50470(LOC_Os02g50470.1) | UTR_5_PRIME |