Detailed information of SNP:
|
SNP ID:
sf0230843961(Gbrowse)
Chromosome: chr02 Position: 30843961 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 96.69% | 3.31% |
| All Indica | 775 | 94.58% | 5.42% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 367 | 99.46% | 0.54% |
| Indica II | 203 | 83.25% | 16.75% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230843961 | G->A | LOC_Os02g50510(LOC_Os02g50510.1) | Synonymous |