Detailed information of SNP:
|
SNP ID:
sf0230902016(Gbrowse)
Chromosome: chr02 Position: 30902016 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 92.66% | 7.34% |
| All Indica | 785 | 87.39% | 12.61% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 95.70% | 4.30% |
| Indica II | 203 | 65.52% | 34.48% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230902016 | G->A | LOC_Os02g50610(LOC_Os02g50610.1) | INTRON |