Detailed information of SNP:
|
SNP ID:
sf0230949490(Gbrowse)
Chromosome: chr02 Position: 30949490 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 55.23% | 44.77% |
| All Indica | 797 | 87.70% | 12.30% |
| All Japonica | 496 | 0.00% | 100.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 83.42% | 16.58% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230949490 | C->T | LOC_Os02g50670(LOC_Os02g50670.1) | SNPs that introduce stop codons |