Detailed information of SNP:
|
SNP ID:
sf0230970716(Gbrowse)
Chromosome: chr02 Position: 30970716 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 56.07% | 43.93% |
| All Indica | 790 | 90.25% | 9.75% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 370 | 88.38% | 11.62% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230970716 | C->T | LOC_Os02g50720(LOC_Os02g50720.1) | Non-Synonymous SNP |