Detailed information of SNP:
|
SNP ID:
sf0231318173(Gbrowse)
Chromosome: chr02 Position: 31318173 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 98.69% | 1.31% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 450 | 96.22% | 3.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 296 | 94.93% | 5.07% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231318173 | C->T | LOC_Os02g51190(LOC_Os02g51190.1) | INTRON |