Detailed information of SNP:
|
SNP ID:
sf0231322911(Gbrowse)
Chromosome: chr02 Position: 31322911 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 96.63% | 3.37% |
| All Indica | 775 | 94.19% | 5.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 95.65% | 4.35% |
| Indica II | 204 | 89.71% | 10.29% |
| Indica Intermediate | 203 | 96.06% | 3.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231322911 | G->A | LOC_Os02g51200(LOC_Os02g51200.1) | Synonymous |