Detailed information of SNP:
|
SNP ID:
sf0231353974(Gbrowse)
Chromosome: chr02 Position: 31353974 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1280 | 94.53% | 5.47% |
| All Indica | 710 | 91.97% | 8.03% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 25 | 68.00% | 32.00% |
| Indica I | 345 | 91.01% | 8.99% |
| Indica II | 194 | 91.75% | 8.25% |
| Indica Intermediate | 171 | 94.15% | 5.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 97.06% | 2.94% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231353974 | T->C | INTERGENIC | None |