Detailed information of SNP:
|
SNP ID:
sf0231405705(Gbrowse)
Chromosome: chr02 Position: 31405705 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 98.23% | 1.77% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 438 | 94.52% | 5.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 91.52% | 8.48% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231405705 | G->C | LOC_Os02g51300(LOC_Os02g51300.1) | INTRON |