Detailed information of SNP:
|
SNP ID:
sf0231460326(Gbrowse)
Chromosome: chr02 Position: 31460326 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.23% | 45.77% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231460326 | G->A | INTERGENIC | None |