Detailed information of SNP:



SNP ID: sf0231588074(Gbrowse)

Chromosome: chr02

Position: 31588074
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 55.71% 44.29%
All Indica798 22.81% 77.19%
All Japonica497 99.60% 0.40%
Aus67 98.51% 1.49%
Indica I375 4.00% 96.00%
Indica II212 50.47% 49.53%
Indica Intermediate211 28.44% 71.56%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0231588074 G->A INTERGENIC None