Detailed information of SNP:
|
SNP ID:
sf0231589899(Gbrowse)
Chromosome: chr02 Position: 31589899 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 90.53% | 9.47% |
| All Indica | 789 | 88.47% | 11.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 46.88% | 53.12% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 206 | 72.33% | 27.67% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231589899 | C->T | INTERGENIC | None |