Detailed information of SNP:
|
SNP ID:
sf0231590360(Gbrowse)
Chromosome: chr02 Position: 31590360 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.96% | 44.04% |
| All Indica | 798 | 23.31% | 76.69% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 4.53% | 95.47% |
| Indica II | 212 | 51.42% | 48.58% |
| Indica Intermediate | 211 | 28.44% | 71.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231590360 | C->T | INTERGENIC | None |