Detailed information of SNP:
|
SNP ID:
sf0231612220(Gbrowse)
Chromosome: chr02 Position: 31612220 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1196 | 93.73% | 6.27% |
| All Indica | 582 | 87.46% | 12.54% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 238 | 81.93% | 18.07% |
| Indica II | 180 | 94.44% | 5.56% |
| Indica Intermediate | 164 | 87.80% | 12.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231612220 | C->T | INTERGENIC | None |