Detailed information of SNP:
|
SNP ID:
sf0231614886(Gbrowse)
Chromosome: chr02 Position: 31614886 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.18% | 39.82% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231614886 | A->G | INTERGENIC | None |