Detailed information of SNP:
|
SNP ID:
sf0231628255(Gbrowse)
Chromosome: chr02 Position: 31628255 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 96.54% | 3.46% |
| All Indica | 742 | 96.77% | 3.23% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 41 | 58.54% | 41.46% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 164 | 96.34% | 3.66% |
| Indica Intermediate | 203 | 96.06% | 3.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231628255 | A->T | LOC_Os02g51650(LOC_Os02g51650.1) | INTRON |