Detailed information of SNP:
|
SNP ID:
sf0231632764(Gbrowse)
Chromosome: chr02 Position: 31632764 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1281 | 96.64% | 3.36% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 369 | 88.35% | 11.65% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 247 | 83.00% | 17.00% |
| Tropical Japonica | 73 | 100.00% | 0.00% |
| Japonica Intermediate | 49 | 97.96% | 2.04% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231632764 | G->A | INTERGENIC | None |