Detailed information of SNP:
|
SNP ID:
sf0231666762(Gbrowse)
Chromosome: chr02 Position: 31666762 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 73.49% | 26.51% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 459 | 23.09% | 76.91% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 329 | 4.86% | 95.14% |
| Tropical Japonica | 69 | 81.16% | 18.84% |
| Japonica Intermediate | 61 | 55.74% | 44.26% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231666762 | T->G | INTERGENIC | None |