Detailed information of SNP:
|
SNP ID:
sf0231675912(Gbrowse)
Chromosome: chr02 Position: 31675912 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 50.70% | 49.30% |
| All Indica | 735 | 19.86% | 80.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 338 | 23.67% | 76.33% |
| Indica II | 200 | 15.00% | 85.00% |
| Indica Intermediate | 197 | 18.27% | 81.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231675912 | G->A | INTERGENIC | None |