Detailed information of SNP:
|
SNP ID:
sf0231771330(Gbrowse)
Chromosome: chr02 Position: 31771330 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1321 | 83.27% | 16.73% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 401 | 45.64% | 54.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 251 | 19.92% | 80.08% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 58 | 79.31% | 20.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231771330 | C->T | INTERGENIC | None |