Detailed information of SNP:
|
SNP ID:
sf0231789762(Gbrowse)
Chromosome: chr02 Position: 31789762 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1257 | 88.78% | 11.22% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 339 | 64.60% | 35.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 216 | 91.67% | 8.33% |
| Tropical Japonica | 81 | 4.94% | 95.06% |
| Japonica Intermediate | 42 | 40.48% | 59.52% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231789762 | C->T | INTERGENIC | None |