Detailed information of SNP:
|
SNP ID:
sf0231844162(Gbrowse)
Chromosome: chr02 Position: 31844162 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 50.42% | 49.58% |
| All Indica | 798 | 85.21% | 14.79% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 21.43% | 78.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231844162 | C->T | INTERGENIC | None |