Detailed information of SNP:
|
SNP ID:
sf0231852768(Gbrowse)
Chromosome: chr02 Position: 31852768 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 54.26% | 45.74% |
| All Indica | 768 | 86.98% | 13.02% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 352 | 85.80% | 14.20% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 206 | 85.92% | 14.08% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231852768 | A->G | LOC_Os02g52050(LOC_Os02g52050.1) | Non-Synonymous SNP |