Detailed information of SNP:
|
SNP ID:
sf0231885578(Gbrowse)
Chromosome: chr02 Position: 31885578 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 88.39% | 11.61% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 493 | 72.01% | 27.99% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 66 | 43.94% | 56.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231885578 | C->T | LOC_Os02g52100(LOC_Os02g52100.1) | Non-Synonymous SNP |