Detailed information of SNP:
|
SNP ID:
sf0231907360(Gbrowse)
Chromosome: chr02 Position: 31907360 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1295 | 84.25% | 15.75% |
| All Indica | 795 | 99.50% | 0.50% |
| All Japonica | 379 | 48.02% | 51.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 228 | 19.30% | 80.70% |
| Tropical Japonica | 89 | 96.63% | 3.37% |
| Japonica Intermediate | 62 | 83.87% | 16.13% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231907360 | A->G | INTERGENIC | None |