Detailed information of SNP:
|
SNP ID:
sf0231958217(Gbrowse)
Chromosome: chr02 Position: 31958217 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.25% | 49.75% |
| All Indica | 797 | 85.19% | 14.81% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 23.81% | 76.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0231958217 | G->A | INTERGENIC | None |