Detailed information of SNP:
|
SNP ID:
sf0232024569(Gbrowse)
Chromosome: chr02 Position: 32024569 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 96.62% | 3.38% |
| All Indica | 772 | 95.73% | 4.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 43 | 76.74% | 23.26% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 189 | 84.66% | 15.34% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232024569 | G->A | LOC_Os02g52330(LOC_Os02g52330.1) | INTRON |