Detailed information of SNP:
|
SNP ID:
sf0232025886(Gbrowse)
Chromosome: chr02 Position: 32025886 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 96.76% | 3.24% |
| All Indica | 777 | 94.98% | 5.02% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 371 | 94.88% | 5.12% |
| Indica II | 200 | 94.50% | 5.50% |
| Indica Intermediate | 206 | 95.63% | 4.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232025886 | C->T | LOC_Os02g52330(LOC_Os02g52330.1) | INTRON |