Detailed information of SNP:
|
SNP ID:
sf0232059502(Gbrowse)
Chromosome: chr02 Position: 32059502 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.42% | 41.58% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232059502 | T->C | LOC_Os02g52390(LOC_Os02g52390.1) | INTRON |