Detailed information of SNP:
|
SNP ID:
sf0232067762(Gbrowse)
Chromosome: chr02 Position: 32067762 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 51.28% | 48.72% |
| All Indica | 794 | 83.00% | 17.00% |
| All Japonica | 455 | 7.03% | 92.97% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 211 | 67.30% | 32.70% |
| Indica Intermediate | 208 | 75.96% | 24.04% |
| Temperate Japonica | 307 | 2.61% | 97.39% |
| Tropical Japonica | 86 | 3.49% | 96.51% |
| Japonica Intermediate | 62 | 33.87% | 66.13% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 25.00% | 75.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232067762 | C->T | LOC_Os02g52410(LOC_Os02g52410.1) | INTRON |