Detailed information of SNP:
|
SNP ID:
sf0232071751(Gbrowse)
Chromosome: chr02 Position: 32071751 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 96.79% | 3.21% |
| All Indica | 772 | 95.47% | 4.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 49 | 85.71% | 14.29% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 189 | 83.60% | 16.40% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232071751 | G->A | LOC_Os02g52410(LOC_Os02g52410.1) | INTRON |