Detailed information of SNP:
|
SNP ID:
sf0232096796(Gbrowse)
Chromosome: chr02 Position: 32096796 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 87.81% | 12.19% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232096796 | A->G | LOC_Os02g52470(LOC_Os02g52470.1) | INTRON |
| sf0232096796 | A->G | LOC_Os02g52470(LOC_Os02g52470.2) | INTRON |