Detailed information of SNP:
|
SNP ID:
sf0232151040(Gbrowse)
Chromosome: chr02 Position: 32151040 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 93.34% | 6.66% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 492 | 84.55% | 15.45% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 331 | 98.49% | 1.51% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232151040 | C->T | INTERGENIC | None |