Detailed information of SNP:
|
SNP ID:
sf0232200145(Gbrowse)
Chromosome: chr02 Position: 32200145 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 62.03% | 37.97% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232200145 | C->T | INTERGENIC | None |