Detailed information of SNP:
|
SNP ID:
sf0232202489(Gbrowse)
Chromosome: chr02 Position: 32202489 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1258 | 89.35% | 10.65% |
| All Indica | 641 | 80.03% | 19.97% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 287 | 72.47% | 27.53% |
| Indica II | 185 | 90.81% | 9.19% |
| Indica Intermediate | 169 | 81.07% | 18.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232202489 | G->A | INTERGENIC | None |