Detailed information of SNP:
|
SNP ID:
sf0232204669(Gbrowse)
Chromosome: chr02 Position: 32204669 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1325 | 93.96% | 6.04% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 409 | 83.37% | 16.63% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 277 | 97.83% | 2.17% |
| Tropical Japonica | 77 | 38.96% | 61.04% |
| Japonica Intermediate | 55 | 72.73% | 27.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232204669 | G->A | INTERGENIC | None |