Detailed information of SNP:
|
SNP ID:
sf0232331047(Gbrowse)
Chromosome: chr02 Position: 32331047 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 86.81% | 13.19% |
| All Indica | 799 | 87.48% | 12.52% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232331047 | T->C | INTERGENIC | None |