Detailed information of SNP:
|
SNP ID:
sf0232436726(Gbrowse)
Chromosome: chr02 Position: 32436726 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 97.85% | 2.15% |
| All Indica | 786 | 97.46% | 2.54% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 59 | 84.75% | 15.25% |
| Indica I | 370 | 98.92% | 1.08% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232436726 | C->T | INTERGENIC | None |