Detailed information of SNP:
|
SNP ID:
sf0232480109(Gbrowse)
Chromosome: chr02 Position: 32480109 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 65.51% | 34.49% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 497 | 11.67% | 88.33% |
| Aus | 63 | 65.08% | 34.92% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 12.24% | 87.76% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232480109 | A->G | LOC_Os02g53090(LOC_Os02g53090.1) | INTRON |