Detailed information of SNP:
|
SNP ID:
sf0232525511(Gbrowse)
Chromosome: chr02 Position: 32525511 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 62.33% | 37.67% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 44.74% | 55.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232525511 | A->G | LOC_Os02g53140(LOC_Os02g53140.1) | Synonymous |